PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G05560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 431aa    MW: 42911.6 Da    PI: 6.5228
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G05560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.5e-12226271555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  ORUFI06G05560.1 226 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 271
                      99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.16E-13219275No hitNo description
SuperFamilySSF474598.64E-17219281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.282221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-16223280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9226271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-13227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MQPSSRDTVA GGGGEGTQDD FFDQMLSTLP SAWADLGGGG GGAAGKSPWE VDPAAAAAAS  60
QVFDESALLA SRLRHHQIGG AGGGGGEKPV MLQLSELHRQ AGGGEEDGSG AFSPLPLFTD  120
RTNVPPREEM EGGFKSPNAA AGGEHALFNG FGVHGGSGGA RAPVINLYDS NIKIVLFVGG  180
SMSGQSFGGP AASGGTAPVT SSGGGGTAPP RQQRVRARRG QATDPHSIAE RLRRERIAER  240
MKSLQELVPN ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGAAGMAP LVASMSSEGN  300
SNGSSNGGGG KASKGGTGGE GGGGGGGGGG GGTGGGMRVT EQQVAKMMEE DMGTAMQYLQ  360
GKGLCLMPIS LASAISSATS SASLLSRPSI RHAGAPPQTM LDAAGPTSPA AMSNGDDPRH  420
AKADGGAGGT Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230235RLRRER
2316332TGGEGGGGGGGGGGGGT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0059190.0AP005919.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0554A06.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642979.10.0PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG99e-72BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0E0PUC70.0A0A0E0PUC7_ORYRU; Uncharacterized protein
STRINGBGIOSGA021777-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-38LJRHL1-like 2